gscreend
Statistical test for pooled CRISPR screens
Input data
Three files, organized as follows:
my_project
|-- gRNAs.tsv
|-- matrix.tsv
`-- samples.tsv
Output files
- results.tsv: A list of genes with associated p-values, and log-fold changes
Parameter settings
- direction — Direction of the screening experiment; possible values: “negative” (default), or “positive”
References
Please cite:
Imkeller et. al. Genome Biology 2020 Bioconductor gscreend package