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COLLECTIONS VIEW BULK SAMPLE

Grid Pattern

Grid view

Usage

  • Input

    On the left panel, three (3) types of data features can be added.

    • DNA alternation (including mutation, CNV, and fusion)
    • Gene expression
    • Clinical data
  • Options

    • Double-clicking a feature name re-orders columns (i.e. samples) by the values of that feature.
    • The order of the individual feature (within a feature type) can be re-arranged by changing the feature order in the input field.
    • Clicking Show details displays a ‘zoom-in’ view.
  • Getting Started
    • Quick Tour
  • DataHub
  • Views - Bulk Collection
    • CNV > CNV Distribution
    • CNV > Gene List
    • Expression > Expression Grouping
    • Expression > Expression Heatmap
    • Expression > Expression Volcano
    • Expression > Expression Waterfall
    • Methylation > Methylation Beta Values
    • Mutation > Alteration Distribution
    • Mutation > Mutated Genes
    • Mutation > Mutation Landscape
    • Sample > Data Availability
    • Sample > Sample Details
    • Sample > Sample Grouping
    • Special > Waterfall
    • Special > Correlation
    • Special > Grid Pattern
    • Special > Survival
  • Views - Single Cell Collection
    • Cell > Cell Details
    • Cell > Cell Grouping
    • Cell > Cell Grouping (Proportion)
    • Correlation
    • Dot Plot
    • Feature
    • Markers
    • Violin Plot
  • Analytics
    • Affymetrix
    • DESeq2
    • FGSEA
    • gscreend
    • Seurat
    • STACAS
  • Projects
  • Commands
    • g3tools
    • ConvertMetaData
    • ConvertData
    • LoadData
    • LoadSingleCell
    • RunAnalysis
  • Installation
    • Server Installation (AMI-Based)
    • Server Installation (Docker-Based)
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  • About
  • Gallery
  • Docs
  • Contact
  • Getting Started
  • DataHub
  • Views - Bulk Collection
  • Views - Single Cell Collection
  • Analytics
  • Projects
  • Commands
  • Installation