g3tools
g3tools
Synopsis
g3tools
is the main command.
g3tools [command] [OPTIONS]+
Options
Usage : g3tools COMMAND [OPTIONS]+
Global options :
-v[=VALUE] Verbosity (with debug information).
-h Help
Available commands :
ConvertData Convert original data to g3bio internal format.
ConvertMetaData Standardize dataset meta data.
ConvertSingleCell Convert single cell data to g3bio internal format.
CreateDomainDatabase
Create or update G3 database.
GetLinuxUserGroupIds
Get user and group IDs on Linux.
LoadData Load pre-formatted internal files into G3 system.
LoadSingleCell Load pre-formatted single cell files into G3
system.
MergeMetaColumn Merge meta column files into one file.
RunAnalysis Perform analyses.
DownloadIcgc Download ICGC data in batch mode.
DownloadUcscSingleCell
Download UCSC single cell data in batch mode.
Under each sub-command, type -h
to list parameters or options availabe for that command.