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INSTALLATION

Server Installation (AMI-Based)

Install G3Edge server from AMI
  1. Obtain G3Edge AMI from G3Bio and launch instance from it

  2. Install SSL certificate for your domain

    • Locate the SSL certificate and its key file. For example, two .pem files for the domain ami.g3bio.com are here:

      /etc/letsencrypt/live/ami.g3bio.com/fullchain.pem /etc/letsencrypt/live/ami.g3bio.com/privkey.pem

  3. Prepare G3Edge service

    • Run g3setup.sh, with three (3) inputs: certificate file (-c), certificate key file (-k), and url (-u). For example, for domain ami.g3bio.com, run

    sudo bash /home/ubuntu/g3setup.sh -c /etc/letsencrypt/live/ami.g3bio.com/fullchain.pem -k /etc/letsencrypt/live/ami.g3bio.com/privkey.pem -u ami.g3bio.com

  4. Start G3Edge service by sudo service kestrel-g3edge start

See Also

  • Server Installation (Docker-Based)
  • Getting Started
    • Quick Tour
  • DataHub
  • Views - Bulk Collection
    • CNV > CNV Distribution
    • CNV > Gene List
    • Expression > Expression Grouping
    • Expression > Expression Heatmap
    • Expression > Expression Volcano
    • Expression > Expression Waterfall
    • Methylation > Methylation Beta Values
    • Mutation > Alteration Distribution
    • Mutation > Mutated Genes
    • Mutation > Mutation Landscape
    • Sample > Data Availability
    • Sample > Sample Details
    • Sample > Sample Grouping
    • Special > Waterfall
    • Special > Correlation
    • Special > Grid Pattern
    • Special > Survival
  • Views - Single Cell Collection
    • Cell > Cell Details
    • Cell > Cell Grouping
    • Cell > Cell Grouping (Proportion)
    • Correlation
    • Dot Plot
    • Feature
    • Markers
    • Violin Plot
  • Analytics
    • Affymetrix
    • DESeq2
    • FGSEA
    • gscreend
    • Seurat
    • STACAS
  • Projects
  • Commands
    • g3tools
    • ConvertMetaData
    • ConvertData
    • LoadData
    • LoadSingleCell
    • RunAnalysis
  • Installation
    • Server Installation (AMI-Based)
    • Server Installation (Docker-Based)
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  • About
  • Gallery
  • Docs
  • Contact
  • Getting Started
  • DataHub
  • Views - Bulk Collection
  • Views - Single Cell Collection
  • Analytics
  • Projects
  • Commands
  • Installation