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PROJECTS

Projects

The Projects module of G3Edge is tightly linked to the Analytics module. It allows users to view final results (e. g. tables or charts) generated from an analysis run. One projct can contain analysis results from one or multiple analysis runs. Users can also create new projects, add additional data and views to an exsiting project, and share a project with other users.

Here is a project example showing results from a gene set enrichment FGSEA run, where the (current) project name and two sections of a project (Data and View) are highlighted.

projects

My Projects

Clcking this button lists all the saved projects from a user, and he/she can pick a project to view. It also allows a user to find, delete and share a project by clicking “Find/Manage”.

Shared Projects

All the shared projects (from another user) are listed here. It also allows a user to find, delete a shared project by clicking “Find/Manage”.

Create Project

Users can create a new project (by adding a name and a short description) here.

Upload Data

Click this button to upload (local) data into the current project.

Add Server Data

This button allows users to transfer data directly to a folder on a G3Edge server.

Add View

Users can add additional View of data (into current project) by clicking this button.

  • Getting Started
    • Quick Tour
  • DataHub
  • Views - Bulk Collection
    • CNV > CNV Distribution
    • CNV > Gene List
    • Expression > Expression Grouping
    • Expression > Expression Heatmap
    • Expression > Expression Volcano
    • Expression > Expression Waterfall
    • Methylation > Methylation Beta Values
    • Mutation > Alteration Distribution
    • Mutation > Mutated Genes
    • Mutation > Mutation Landscape
    • Sample > Data Availability
    • Sample > Sample Details
    • Sample > Sample Grouping
    • Special > Waterfall
    • Special > Correlation
    • Special > Grid Pattern
    • Special > Survival
  • Views - Single Cell Collection
    • Cell > Cell Details
    • Cell > Cell Grouping
    • Cell > Cell Grouping (Proportion)
    • Correlation
    • Dot Plot
    • Feature
    • Markers
    • Violin Plot
  • Analytics
    • Affymetrix
    • DESeq2
    • FGSEA
    • gscreend
    • Seurat
    • STACAS
  • Projects
  • Commands
    • g3tools
    • ConvertMetaData
    • ConvertData
    • LoadData
    • LoadSingleCell
    • RunAnalysis
  • Installation
    • Server Installation (AMI-Based)
    • Server Installation (Docker-Based)
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  • About
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  • Getting Started
  • DataHub
  • Views - Bulk Collection
  • Views - Single Cell Collection
  • Analytics
  • Projects
  • Commands
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