g3tools

Synopsis

g3tools is the main command.

g3tools [command] [OPTIONS]+

Options

Usage : g3tools COMMAND [OPTIONS]+

Global options :
  -v[=VALUE]                 Verbosity (with debug information).
  -h                         Help
Available commands :
        ConvertData          Convert original data to g3bio internal format.
        ConvertMetaData      Standardize dataset meta data.
        ConvertSingleCell    Convert single cell data to g3bio internal format.
        CreateDomainDatabase
                             Create or update G3 database.
        GetLinuxUserGroupIds
                             Get user and group IDs on Linux.
        LoadData             Load pre-formatted internal files into G3 system.
        LoadSingleCell       Load pre-formatted single cell files into G3
                               system.
        MergeMetaColumn      Merge meta column files into one file.
        RunAnalysis          Perform analyses.
        DownloadIcgc         Download ICGC data in batch mode.
        DownloadUcscSingleCell
                             Download UCSC single cell data in batch mode.

Under each sub-command, type -h to list parameters or options availabe for that command.